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La fauna íctica en el litoral de la Bahía de San Antonio (Golfo San Matías, Provincia de Río Negro) OceanDocs
Perier, M.R..
La bahía de San Antonio es una zona costera protegida del litoral marítimo que presenta una variada composición faunística (invertebrados, peces, aves y mamíferos). Respecto de la fauna íctica, existe información preliminar que permitió detectar la presencia de especies que presentaban gónadas en estadío de maduración total y se observaron, estacionalmente, ejemplares juveniles de esas y otras especies que motivaron el planteo de las siguientes hipótesis: 1) La bahía San Antonio y la zona de mar adyacente es utilizada por numerosas especies de peces como zona de desove. 2) La bahía San Antonio y la zona de mar adyacente es utilizada por numerosas especies como área de cría y 3) La bahía San Antonio y la zona de mar adyacente es utilizada como zona de...
Tipo: Theses and Dissertations Palavras-chave: Fishery biology; Fisheries resources; Coastal zone; Ichthyofauna; Spawning grounds; Nursery grounds; Feeding migrations; Environmental conditions; Population structure; Reproduction; Trophic relationships.
Ano: 1994 URL: http://hdl.handle.net/1834/4203
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La pesquería de besugo (Pagrus pagrus). Análisis de las capturas, esfuerzo nominal y estructura de los desembarques en 2011 OceanDocs
García, S..
Red porgy (Pagrus pagrus) fishery. Analysis of catches, nominal effort and landings structure in 2011. A descriptive analysis of red porgy (Pagrus pagrus) fishery within the Buenos Aires Coastal Ecosystem (BCE) and the Argentine continental shelf, between 34° S and 42° S, during 2011 was performed. The catches landed, of a total of 3,627 t, performed in a direct and incidental way by an heterogeneous fleet of 149 vessels belonging to five strata (Ia, Ib, Ic, IIa and IIb) in 1,527 fishing trips represented a 36.7% decrease as regards 2010. The spatiotemporal analysis allowed to determine that the highest yields of the species were obtained close to 50 m depth, that coincides with the highest surface temperatures in the area, that decrease in a...
Tipo: Journal Contribution Palavras-chave: Catch/effort; Landing statistics; Population structure; Coastal fisheries.
Ano: 2013 URL: http://hdl.handle.net/1834/5509
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Large-scale distribution of three deep-water squaloid sharks: Integrating data on sex, maturity and environment ArchiMer
Moura, Teresa; Jones, Emma; Clarke, Maurice W.; Cotton, Charles F.; Crozier, Paul; Daley, Ross K.; Diez, Guzman; Dobby, Helen; Dyb, Jan E.; Fossen, Inge; Irvine, Sarah B.; Jakobsdottir, Klara; Lopez-abellan, Luis J.; Lorance, Pascal; Pascual-alayon, Pedro; Severino, Ricardo B.; Figueiredo, Ivone.
Deep-water sharks exhibit species-specific reproductive strategies, which include segregation by sex, size and reproductive stage. However, due to the wide spatial distribution of most species, available information, usually collected at a regional scale, is usually not adequate to infer species reproductive spatial dynamics. This study draws together information on the distribution of reproductive stages of three species of squaliform sharks: Portuguese dogfish Centroscymnus coelolepis (Somniosidae), leafscale gulper shark Centrophorus squamosus (Centrophoridae) and birdbeak dogfish Deania calcea (Centrophoridae), gathering data from several geographical areas from the Atlantic, Indian and Pacific Oceans. For each species we analysed the sex ratio and the...
Tipo: Text Palavras-chave: Commercial fishery data; Deep-sea; Life stage; Population structure; Survey data.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00188/29902/29420.pdf
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Le ceteau Dicologoglossa cunetata (Moreau), sa biologie et sa peche dans le sud du golfe de Gasgogne. ArchiMer
Forest, A.
This study deals with D.cuneata, a small soleid listed among the spp of NEAFC Recommendation 2 and exploited by the 'artisanal' trawlers in the South of the Bay of Biscay. The gonads/gutted fish wt ratio has been calculated throughout a yr, and shows that young Dicologoglossa are able to reproduce at age-group II. Spawning takes place during the 3rd quarter. Growth has been determined by otolith reading and length frequency analysis; Bertalanffy's and Gompertz's equations parameters have been studied, and attempts to estimate the instantaneous rate of total mortality have been made. The results are: male Z 3-5=0.74 and 0.83, female Z 3-5=0.96 and 1.35. Selectivity experiments carried out on board of R/V 'La Palagia' give a selection factor of 3.9. The...
Tipo: Text Palavras-chave: Microchirus; Dicologoglossa cuneata; Population structure; Gear selectivity; Total mortality; Population characteristics; Fishing effort; Artisanal fishing; Reproductive organs; Growth; Fishery statistics.
Ano: 1975 URL: http://archimer.ifremer.fr/doc/1975/publication-2003.pdf
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Lessons from the past: investigating historical data from bluefin tuna fisheries ArchiMer
Fromentin, Jean-marc.
In 1963, the leading fisheries targeting Atlantic bluefin tuna (Thunnus thynnus) in the Norwegian Sea and North Sea suddenly collapsed without any warning. Little is known about this collapse and several hypotheses have been put forward, such as changes in migratory routes, recruitment failure or eradication of a sub-population: all of these hypotheses could result from natural causes and/or from overfishing. To help explain this mysterious event, an original data set of the main bluefin tuna fisheries of the 20th century, including total catch and size composition of the catch, has been compiled and analysed. The results reveal a strong and unambiguous link between the Nordic purse seine and Spanish trap fisheries during the 1950s and 1960s. However, this...
Tipo: Text Palavras-chave: Thunnus thynnus; Retrospective analysis; Population structure; Migration patterns; Fisheries collapse.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/2009/publication-6425.pdf
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Life Cycle Observations on Amphilocus neapolitanus (Della Valle, 1853) (Crustacea, Amphipoda) Associated with Sargassum cymosum C. Agardh, 1820 in Ubatuba, (SP), Brazil BABT
Leite,Fosca Pedini Pereira.
Day and night densities, reproductive biology and life cycle of Amphilocus neapolitanus (Della Valle, 1853), associated with Sargassum cymosum C. Agardh, 1820, were studied during 13 months. The density of juveniles, males and females was higher in night samples than in day samples. Sex ratio was strongly favorable toward the females. Ovigerous females were present in similar densities in both the periods while the non-ovigerous females were predominant at night. The egg number was not correlated with the size of the females. Breeding occurred throughout the year.
Tipo: Info:eu-repo/semantics/article Palavras-chave: Population structure; Reproductive biology; Life cycle; Amphipoda; Sargassum.
Ano: 2002 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1516-89132002000300014
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Linkage disequilibrium, genetic association mapping and gene localization in crop plants Genet. Mol. Biol.
Sorkheh,Karim; Malysheva-Otto,Lyudmyla V.; Wirthensohn,Michelle G.; Tarkesh-Esfahani,Saeed; Martínez-Gómez,Pedro.
DNA-based molecular markers have been extensively utilized for a variety of studies in both plant and animal systems. One of the major uses of these markers is the construction of genome-wide molecular maps and the genetic analysis of simple and complex traits. However, these studies are generally based on linkage analysis in mapping populations, thus placing serious limitations in using molecular markers for genetic analysis in a variety of plant populations. Therefore, alternative approach has been suggested, linkage disequilibrium-based association analysis which detects and locates quantitative trait loci (QTL) by the strength of the correlation between a trait and a marker. Although association analysis has already been used for studies on genetics of...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Linkage disequilibrium; LD; Association mapping; Population structure; QTLs; Localization of genes; Marker-trait associations.
Ano: 2008 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572008000500001
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Linking life-history traits, spatial distribution and abundance of two species of lugworms to bait collection: A case study for sustainable management plan ArchiMer
De Cubber, Lola; Lefebvre, Sebastien; Fisseau, Charline; Cornille, Vincent; Gaudron, Sylvie Marylene.
Arenicola spp. are marine benthic polychaetes dug for bait by anglers. Without regulation, this activity can lead to the decrease of lugworms' population meanwhile affecting the physical characteristics of the beach and the biodiversity. Here, we identified through morphology and genetics two species of lugworms, Arenicola marina and A. defodiens, within a Marine Protected Area of the Eastern English Channel (France). For each species, abundance and spatial distribution were assessed using a stratified random sampling and interpolation at four studied sites, as well as some life-history traits. These data were compared to lugworms' collection data to estimate its sustainability and to provide potential management measures. At one site, A. marina was...
Tipo: Text Palavras-chave: Arenicola marina; Arenicola defodiens; Spawning; Population structure; Size at first maturity; Recreational fisheries; Conservation; English channel.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00451/56284/60474.pdf
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Microhabitat preferences of the freshwater prawn Macrobrachium jelskii (Decapoda: Palaemonidae) Iheringia, Sér. Zool.
Silva,Jersei N.; Oliveira,Guilherme de; Rocha,Sérgio S. da.
ABSTRACT We analyzed the microhabitat preferences of Macrobrachium jelskii (Miers, 1877) males and females inhabiting an urban water reservoir in Cruz das Almas, Bahia, Brazil. Prawns were collected monthly, from March 2015 to February 2016, in three microhabitats, using a sieve. Each microhabitat was dominated by one macrophyte species: Eleocharis sp. (M1), Cabomba sp. (M2), and Nymphaea sp. (M3). The prawns were measured (carapace length), and categorized as juvenile males, adult males, juvenile females, non-ovigerous adult females and ovigerous adult females. An analysis of variance (ANOVA) was used to compare the number and size of individuals. The sex ratio and frequency of ovigerous females in the three microhabitats were also calculated. The sex...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Macrophyte; Population structure; Reproduction; Spatial distribution.
Ano: 2019 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0073-47212019000100227
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Mitochondrial DNA phylogeography of Brazilian populations of Drosophila buzzatii Genet. Mol. Biol.
Brito,Reinaldo A. de; Manfrin,Maura H.; Sene,Fabio M..
The Argentinean Chaco region has been considered the center of origin of Drosophila buzzatii in South America because it contains most of the chromosomal polymorphism detected in natural populations. Two hypotheses have been put forward to explain the distribution of D. buzzatii in Brazil, one proposing that it has only recently passively colonized Brazil via human dispersal and the other suggesting that D. buzzatii has actively migrated to Brazil some time ago. Data from chromosomal inversions support recent colonization, whereas data from allozymes and mtDNA variation indicate that D. buzzatii has been in Brazil longer, favoring an active dispersal hypothesis. In our present work we analyzed data on 56 South American flies, mostly from Brazil, sequenced...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Drosophila buzzatii; Population structure; Mitochondrial DNA; Phylogeography; Brazil; Climatic cycles.
Ano: 2002 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572002000200009
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Morphometric and genetic differentiation among populations of Eupemphix nattereri (Amphibia, Anura, Leiuperidae) from central Brazil Iheringia, Sér. Zool.
Silva,Daniela de M. e; Cruz,Aparecido D. da; Bastos,Rogério P.; Telles,Mariana P. de C.; Diniz-Filho,José Alexandre F..
To assess genetic structure and phenotypic diversity of Eupemphix nattereri Steindachner, 1863, morphometric and molecular analyses were carried out for nine populations from the State of Goiás. A total of 11 morphometric traits were evaluated and genetic information was estimated using RAPD markers. Genetic and phenotypic distances were determined as a function of geographical origin. Correlation among genetic, morphometric, micro, and macroenviromental were analyzed by the Mantel test. Genetic data indicated high levels of genetic diversity (Φst= 0.3) among the nine populations. Mantel tests did not reveal a significant positive correlation between genetic and geographical distances, indicating that locally geographical populations were not genetically...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Eupemphix nattereri; Morphology; RAPD markers; Gene flow; Population structure.
Ano: 2008 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0073-47212008000400013
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Observaciones sobre una población de Strombus gigas L. en la Ensenada de Nenguange, Caribe colombiano OceanDocs
Botero, L..
Se estudia una población de Strombus gigas localizada a 12 m de profundidad en la Ensenada de Nenguange. La población ocupa un área aproximada de 98400 m². La densidad promedio más alta registrada fue de 1 caracol/14 m * y la más baja de 1 caracol/ 33 m² Estas variaciones en la densidad parecen estar relacionados con las condiciones ambientales, especialmente agitación y temperatura del agua. Los caracoles de esta población se caracterizan por una concha masiva totalmente recubierta de algas, corales, esponjas y otros organismos. El grueso labio externo es constantemente erodado por animales perforadores y reemplazado en grosor por el caracol. Se encontró una sola clase de tamaños de individuos y una casi completa ausencia de juveniles. Se registró...
Tipo: Journal Contribution Palavras-chave: Marine molluscs; Population structure; Shells; Population structure; Http://aims.fao.org/aos/agrovoc/c_6115.
Ano: 1984 URL: http://hdl.handle.net/1834/4032
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Optimization procedures for establishing reserve networks for biodiversity conservation taking into account population genetic structure Genet. Mol. Biol.
Diniz Filho,José Alexandre Felizola; Telles,Mariana Pires de Campos.
Conservation genetics has been focused on the ecological and evolutionary persistence of targets (species or other intraspecific units), especially when dealing with narrow-ranged species, and no generalized solution regarding the problem of where to concentrate conservation efforts for multiple genetic targets has yet been achieved. Broadly distributed and abundant species allow the identification of evolutionary significant units, management units, phylogeographical units or other spatial patterns in genetic variability, including those generated by effects of habitat fragmentation caused by human activities. However, these genetic units are rarely considered as priority conservation targets in regional conservation planning procedures. In this paper, we...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Biodiversity conservation; Population structure; Geographic genetics.
Ano: 2006 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572006000200004
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Otolith shape variation provides a marker of stock origin for north Atlantic bluefin tuna (Thunnus thynnus) ArchiMer
Brophy, Deirdre; Haynes, Paula; Arrizabalaga, Haritz; Fraile, Igaratza; Fromentin, Jean-marc; Garibaldi, Fulvio; Katavic, Ivan; Tinti, Fausto; Karakulak, F. Saadet; Macias, David; Busawon, Dheeraj; Hanke, Alex; Kimoto, Ai; Sakai, Osamu; Deguara, Simeon; Abid, Nouredinne; Santos, Miguel Neves.
Two stocks of bluefin tuna (Thunnus thynnus) inhabit the north Atlantic; the western and eastern stocks spawn in the Gulf of Mexico and the Mediterranean Sea respectively. Trans-Atlantic movements occur outside spawning time whereas natal homing maintains stock structure. Commercial fisheries may exploit a mixed assemblage of both stocks. The incorporation of mixing rates into stock assessment is precluded by uncertainties surrounding stock discrimination. Otolith shape descriptors were used to characterise western and eastern stocks of Atlantic bluefin tuna in the present study and to estimate stock composition in catches of unknown origin. Otolith shape varied with length and between locations and years. Within a restricted size range (200-297-cm fork...
Tipo: Text Palavras-chave: Elliptical Fourier analysis; Population structure; Stock mixture analysis.
Ano: 2016 URL: http://archimer.ifremer.fr/doc/00346/45745/45381.pdf
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Pedigree analysis on the population of Gir cattle in Northeast Brazil R. Bras. Zootec.
Oliveira,Aracele Prates de; Malhado,Carlos Henrique Mendes; Carneiro,Paulo Luiz Souza; Martins Filho,Raimundo; Silveira,Éderson Silva; Souza,Laaina de Andrade; Muniz,Lorena Mirelle Santos; Azevêdo,Danielle Maria Machado Ribeiro.
The objective of this study was to characterize the population genetic structure of the Gir breed in the Northeast of Brazil. The data used in this study were taken from pedigree information of 8,897 Gir animals between 1957 and 2007, obtained from the Brazilian Zebu Breeders Association (ABCZ). The program ENDOG was used to estimate the parameters based on the probability gene origin. From the amount of the studied animals, 67.22%, 18.41% and 3.15% had complete pedigree only on the first, second and third parentage, respectively. The number of ancestors that contributed for the reference population was 2,755, of which only 171 explain the 50% genetic variability of the population. The actual number of founder herds was 168 and the effective number of...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Ancestry; Inbreeding; Population structure.
Ano: 2012 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1516-35982012000500011
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Performance of maximum likelihood mixture models to estimate nursery habitat contributions to fish stocks: a case study on sea bream Sparus aurata ArchiMer
Niklitschek, Edwin J.; Darnaude, Audrey M..
Background: Mixture models (MM) can be used to describe mixed stocks considering three sets of parameters: the total number of contributing sources, their chemical baseline signatures and their mixing proportions. When all nursery sources have been previously identified and sampled for juvenile fish to produce baseline nursery-signatures, mixing proportions are the only unknown set of parameters to be estimated from the mixed-stock data. Otherwise, the number of sources, as well as some/all nursery-signatures may need to be also estimated from the mixed-stock data. Our goal was to assess bias and uncertainty in these MM parameters when estimated using unconditional maximum likelihood approaches (ML-MM), under several incomplete sampling and...
Tipo: Text Palavras-chave: Otolith chemistry; Mixture models; Mixed stocks; Mixing proportions; Mixing models; Stock identification; Stock structure; Fish stocks; Population structure; Sparus aurata.
Ano: 2016 URL: https://archimer.ifremer.fr/doc/00625/73753/74388.pdf
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Pesquerías de pulpos OceanDocs
Re, M.E..
The species composition, population structure, seasonality in catches and fishing of octopuses along the Argentine coast are described from available statistical data and capture samplings. Three species of octopuses, Octopus tehuelchus, Eledone massyae and Enteroctopus megalocyathus are caught. An artisanal intertidal fishery of O.tehuelchus occurs mainly in summer, from November-December to March-April in the North Patagonian coast, especially in the San Matias Gulf, by hooks. E.massyae is caught by coastal trawlers all around the year but mainly in winter and spring in Mar del Plata and Necochea areas. E.megalocyathus is caught by hooks in the intertidal zone and by diving in the subtidal zone, from the North Patagonian gulfs (March to November)to the...
Tipo: Book Section Palavras-chave: Artisanal fishing; Catch/effort; Cephalopod fisheries; Fishery management; Stock assessment; Population structure; Bottom trawling; Fishery management; Stock assessment; Population structure; Http://aims.fao.org/aos/agrovoc/c_24026; Http://aims.fao.org/aos/agrovoc/c_24251; Http://aims.fao.org/aos/agrovoc/c_6115.
Ano: 1998 URL: http://hdl.handle.net/1834/2578
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Phylogeographic history of South American populations of the silky anteater Cyclopes didactylus (Pilosa: Cyclopedidae) Genet. Mol. Biol.
Coimbra,Raphael Teodoro Franciscani; Miranda,Flávia Regina; Lara,Camila Clozato; Schetino,Marco Antônio Alves; Santos,Fabrício Rodrigues dos.
Abstract Cyclopes didactylus, commonly called silky anteater, is the smallest and least studied of the anteaters. It is an arboreal species occurring in rainforests, ranging from southern Mexico to Central and South America, with an apparently disjoint distribution between Amazon and Atlantic rainforests in Brazil. Although seven subspecies are recognized, little is known about its geographical variation. Thus, to evaluate the population dynamics and evolutionary history of the South American silky anteater, we analyzed 1542 bp sequences of the mitochondrial control region (CR), COI and Cyt-b genes of 32 individuals. Haplotype network, AMOVA and molecular dating analyses were performed and identified seven geographic clusters. The split of lineages...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Xenarthra; Mitochondrial DNA; Population structure; Molecular dating; South America.
Ano: 2017 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572017000100040
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Phylogeography of the Neotropical catfish Pimelodus albicans (Siluriformes: Pimelodidae) from río de la Plata basin, South America, and conservation remarks Neotropical Ichthyology
Vergara,Julia; Azpelicueta,María de las Mercedes; Garcia,Graciela.
Pimelodus albicans Valenciennes, 1840 (common name "moncholo" or "bagre blanco") is an endemic species of the family Pimelodidae in the río de la Plata basin. Phylogenetic approach based on cytochrome b sequences was performed to test the existence of a unique evolutionary lineage in P. albicans and to discriminate populations units or subpopulations related to a migration behavior of this taxon in the río de la Plata basin. This study included 34 samples of P. albicans of different collecting sites in the río de la Plata estuary and in the río Arrecifes belonging to the río Paraná basin. Among 614 base pairs in the cytochrome b sequence data set, 203 were variable and 120 were phylogenetically informative sites in P. albicans. A total of twenty...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Population structure; Cytochrome b gene.
Ano: 2008 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1679-62252008000100009
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Phytophthora infestans POPULATION STRUCTURE: A WORLDWIDE SCALE Acta biol.Colomb.
CÁRDENAS,MARTHA; DANIES,GIOVANNA; TABIMA,JAVIER; BERNAL,ADRIANA; RESTREPO,SILVIA.
Phytophthora infestans, the causal agent of late blight disease in potato and other members of the Solanaceae family, is responsible for causing the Irish potato famine and, even today, it causes enormous economic losses all over the world. For the establishment of an adequate pest management strategy, the determination of the pathogen's population structure is required. To characterize P. infestans populations worldwide two allozymes, Gpi (Glucose-6-phospate isomerase) and Pep ( Pep tidase), the RG57 DNA RFLP fingerprinting probe, as well as resistance to the fungicide metalaxyl and mating type, have been used as markers. P. infestans populations in Mexico have been one of the main focuses of research in the population biology of this pathogen because...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Phytophthora infestans; Population structure; Late blight.
Ano: 2012 URL: http://www.scielo.org.co/scielo.php?script=sci_arttext&pid=S0120-548X2012000200001
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